Article-Journal

Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse
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NucleusJ: an ImageJ plugin for quantifying 3D images of interphase nuclei
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Phenotyping nematode feeding sites: three-dimensional reconstruction and volumetric measurements of giant cells induced by root-knot nematodes in Arabidopsis
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A generic classification-based method for segmentation of nuclei in 3D images of early embryos
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Fiji: an open-source platform for biological-image analysis
Fiji is a distribution of the popular open-source software ImageJ focused on biological-image analysis. Fiji uses modern software …
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TrakEM2 Software for Neural Circuit Reconstruction
A key challenge in neuroscience is the expeditious reconstruction of neuronal circuits. For model systems such as Drosophila and C. …
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Serial two-photon tomography: an automated method for ex-vivo mouse brain imaging
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BoneJ: Free and extensible bone image analysis in ImageJ
Bone geometry is commonly measured on computed tomographic (CT) and X-ray microtomographic ([mu]CT) images. We obtained hundreds of CT, …
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3D Reconstruction of Histological Sections: Application to Mammary Gland Tissue
In this article, we present a novel method for the automatic 3D reconstruction of thick tissue blocks from 2D histological sections. …
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Identifying Neuronal Lineages of Drosophila by Sequence Analysis of Axon Tracts
The Drosophila brain is formed by an invariant set of lineages, each of which is derived from a unique neural stem cell (neuroblast) …
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