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Serial two-photon tomography: an automated method for ex-vivo mouse brain imaging
Timothy Ragan
,
Lolahon R. Kadiri
,
Kannan Umadevi Venkataraju
,
Karsten Bahlmann
,
Julian Taranda
,
Ignacio Arganda-Carreras
,
Jason Sutin
,
H. Sebastian Seung
,
Pavel Osten
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URL
BoneJ: Free and extensible bone image analysis in ImageJ
Bone geometry is commonly measured on computed tomographic (CT) and X-ray microtomographic ([mu]CT) images. We obtained hundreds of CT, …
Michael Doube
,
Michal M. Klosowski
,
Ignacio Arganda-Carreras
,
Fabrice P. Cordelieres
,
Robert P. Dougherty
,
Jonathan S. Jackson
,
Benjamin Schmid
,
John R. Hutchinson
,
Sandra J. Shefelbine
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DOI
3D Reconstruction of Histological Sections: Application to Mammary Gland Tissue
In this article, we present a novel method for the automatic 3D reconstruction of thick tissue blocks from 2D histological sections. …
Ignacio Arganda-Carreras
,
Rodrigo Fernandez-Gonzalez
,
Arrate Muñoz-Barrutia
,
Carlos Ortiz-De-Solorzano
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DOI
Identifying Neuronal Lineages of Drosophila by Sequence Analysis of Axon Tracts
The Drosophila brain is formed by an invariant set of lineages, each of which is derived from a unique neural stem cell (neuroblast) …
Albert Cardona
,
Stephan Saalfeld
,
Ignacio Arganda-Carreras
,
Wayne Pereanu
,
Johannes Schindelin
,
Volker Hartenstein
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DOI
Non-rigid consistent registration of 2D image sequences
We present a novel algorithm for the registration of 2D image sequences that combines the principles of multiresolution B-spline-based …
Ignacio Arganda-Carreras
,
Carlos ~O.~S. Sorzano
,
Philippe Thévenaz
,
Arrate Muñoz-Barrutia
,
Jan Kybic
,
Roberto Marabini
,
Jose Maria Carazo
,
Carlos Ortiz-De-Solorzano
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DOI
URL
Elastic Image Registration of 2D gels for differential and repeatability studies
Carlos ~O.~S. Sorzano
,
Ignacio Arganda-Carreras
,
Philippe Thévenaz
,
Ana Beloso
,
Gracia Morales
,
Israel Valdes
,
Carmen Perez-Garcia
,
Carmen Castillo
,
Elisa Garrido
,
Michael Unser
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DOI
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